SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	TT	CT	GG	AC	CG	AG	CT	GG	GG	AT	CC
1._RUQ_849B	_	_	CC	_	_	_	_	_	AG	_	GG	_	_	_
2._IMC_47	_	_	CC	TT	CT	_	AC	CC	AG	CT	_	_	AT	_
3._RUQ_849	_	_	CC	GT	CT	_	AC	CG	AG	CT	_	_	AT	_
4._IMC_47	_	_	CC	GT	CT	_	AC	_	AG	CT	_	_	AT	_
5._IMC_47	_	_	CC	GT	CT	_	AC	_	AG	TT	_	_	AA	_
6._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
7._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
8._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
9._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
10._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
11._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
12._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
13._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
14._IMC_47	_	_	AA	GG	CT	_	AC	CG	AG	CT	_	_	AT	_
15._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
16._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
17._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
18._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
19._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
20._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
21._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
22._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
23._GC-08-103-3-02	CT	AC	AA	GG	CT	GG	AC	CG	AG	CT	AA	AG	AT	GG
24._MITC-000413	AA	CC	CC	AA	AG	GG	AC	CG	AG	AG	GG	GG	AT	GG
25._GC-08-103-3-2	AG	AC	AA	CC	AG	GG	AC	CG	AG	AG	AA	AG	AT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CC	GG	CG	AC	CC	CC	TT	GG	AG	TT	AC	CC
1._RUQ_849B	_	AC	_	_	GG	AC	CC	_	TT	GG	AG	_	AC	CC
2._IMC_47	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
3._RUQ_849	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
4._IMC_47	AG	AC	CT	GT	CC	AC	_	TT	_	GG	_	_	_	CC
5._IMC_47	AA	CC	CT	GT	GG	AA	_	CC	_	GG	_	_	_	CC
6._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
7._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
8._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
9._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
10._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
11._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
12._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
13._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
14._IMC_47	AG	AC	CT	GT	CG	AC	_	TT	_	GT	_	_	_	CC
15._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
16._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
17._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
18._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
19._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
20._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
21._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
22._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
23._GC-08-103-3-02	AG	AC	CT	GT	CG	AC	CC	TT	CT	GT	AG	TT	AC	CC
24._MITC-000413	_	AC	_	CC	CG	AC	GG	GG	_	CC	AG	AA	AC	GG
25._GC-08-103-3-2	_	AC	_	AC	CG	AC	GG	AA	_	AC	AG	AA	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	TT	AA	CC	CC	GG	GG	TT	GT	CT	CC	TT	CG	AG
1._RUQ_849B	_	_	AA	CC	_	_	_	_	GT	_	_	_	CG	_
2._IMC_47	_	TT	AA	_	CC	_	_	_	GT	_	_	TT	CG	AG
3._RUQ_849	_	CT	AG	_	CC	_	_	_	GT	_	_	TT	CG	AG
4._IMC_47	_	CT	AA	_	CC	_	_	_	GT	_	_	TT	CG	AA
5._IMC_47	_	CT	AA	_	CT	_	_	_	GT	_	_	TT	GG	AG
6._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
7._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
8._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
9._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
10._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
11._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
12._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
13._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
14._IMC_47	_	CT	AG	_	CT	_	_	_	GT	_	_	TT	CG	AA
15._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
16._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
17._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
18._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
19._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
20._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
21._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
22._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
23._GC-08-103-3-02	CC	CT	AG	CC	CT	GG	AG	AT	GT	_	CT	TT	CG	AA
24._MITC-000413	_	AA	AA	_	GG	CC	GG	_	AA	AG	GG	AA	CG	AG
25._GC-08-103-3-2	_	AG	AG	_	AG	CC	AG	_	AC	GG	AG	AA	CG	AA

Input profile: IMC_47 RUQ_849

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._IMC_47 RUQ_849B

96.9 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._IMC_47

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

3._IMC_47 RUQ_849

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._IMC_47

80.4 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T1

Dapeng Zhang, 2016

5._IMC_47

76.1 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

6._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 1 > FP

Dapeng Zhang, 2016

7._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 7

Dapeng Zhang, 2016

9._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 10

Dapeng Zhang, 2016

10._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 11

Dapeng Zhang, 2016

11._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 12

Dapeng Zhang, 2016

12._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 3 > FP

Dapeng Zhang, 2016

13._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 5 > FP

Dapeng Zhang, 2016

14._IMC_47

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 6 > FP

Dapeng Zhang, 2016

15._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

16._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

17._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

18._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

19._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

20._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

21._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

22._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

23._IMC_47 GC-08-103-3-02

69.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

24._IMC_47 MITC-000413

50 %
36 shared markers

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USDA-SHRS, United States of America

25._IMC_47 GC-08-103-3-2

40.3 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: Brazil_Selections_Poss_grandparent/ CW

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484